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Xiuwei Zhang

Research Interests

I work on data analysis of single-cell RNA-Seq, particularly for T helper cells. By single-cell and bulk RNA-Seq data we seek to find the

mechanism of T helper cell differentiation and potential subtypes of cells.


Key Publications

Brennecke P, Anders S, Kim JK, Kołodziejczyk AA, Zhang X, Proserpio V, Baying B, Benes V, Teichmann SA, Marioni JC, Marcus GH.
Accounting for technical noise in single-cell RNA-seq experiments. Nature Methods, 2013.

Zhang X, Perica T, Teichmann SA. Evolution of protein structures and interactions from the perspective of residue contact networks. Current Opinion in Structural Biology, 2013

Zhang X, Moret BME. Refining Regulatory Networks through Phylogenetic Transfer of Information. IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB), 9(4): 1032-1045, 2012.

Zhang X, Kupiec M, Gophna U, Tuller T. Analysis of coevolving gene families using mutually exclusive orthologous modules. Genome Biology and Evolution, 3: 413-423, 2011.

Zhang X, Moret BME. Refining transcriptional regulatory networks using network evolutionary models and gene histories. Algorithms for Molecular Biology, 5: 1, 2010.