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Cambridge Immunology Network

 
Computational Biology
Immune System
T cell immunology
Single-cell technologies

We aim to understand how T cells sense and integrate information from both infection and the physiological environment to generate appropriate immune responses.

Biography

Arianne is originally from the United States and received her undergraduate degree in Biochemistry from Columbia University (New York). During her PhD, she worked between the National Institutes of Health (USA) and the University of Cambridge. Her doctoral research examined the functional effects of genetic variants in TNF-family cytokines associated with autoimmune disease and sparked her interest in computational biology. Arianne then undertook a joint post-doctoral position between the labs of Prof Gillian Griffiths and Dr John Marioni (University of Cambridge and European Bioinformatics Institute). Supported by an MRC Skills Development Fellowship, her work used single-cell genomics to investigate early activation of naïve T cells.

In 2022, Arianne began as an MRC Career Development Award fellow and tenure track investigator at the Babraham Institute. Her research combines classical immunology with single-cell genomics and computational biology, with a long-term goal of understanding how T cells assimilate signals from pathogens and the immune environment to generate an appropriate response.

Research

We aim to understand how T cells sense and integrate information from both infection and the physiological environment to generate appropriate immune responses.

T cells play a critical role in the immune system, fighting both infections and cancers. When a T cell first recognizes a pathogen, it is stimulated to multiply, and its daughter cells differentiate into specialized cell types. These differentiated cells include effector cells that fight the current infection and memory cells that defend against future reinfection. The ability to generate both of these responses is critical for a healthy immune system.

Differentiation outcomes are not uniform, but rather can differ in cell number and the balance of specialized cell types that differentiate. We are interested in the factors that influence differentiation outcomes, including the initial encounter with a pathogen and the interactions that T cells have with other cells and their environment as they move within lymphoid and non-lymphoid organs. A better understanding of these factors can ultimately inform the design of therapeutics that aim to achieve specific types of T cell responses, including vaccines and cancer immunotherapeutics.

Our work combines experimental models of infection with single-cell genomics and computational biology to investigate how pathogens and the immunological environment shape T cell responses.

Publications

Key publications: 

Divide and conquer: phenotypic and temporal heterogeneity within CS8 T cell responses

Richard AC
Frontiers in Immunology PMID:35911755

Stimulation strength controls the rate of initiation but not the molecular organisation of TCR-induced signalling

Ma CY, Marioni JC, Griffiths GM, Richard AC
eLife PMID:32412411

T cell cytolytic activity is independent of initial stimulation strength

Richard AC, Lun ATL, Lau WWY, Göttgens B, Marioni JC, Griffiths GM
Nature Immunology PMID:30013148

Other publications: 

Porcine respiratory coronavirus as a model for acute respiratory disease: mechanisms of different infection outcomes.

Sedaghat-Rostami E, Carr BV, Yang L, Keep S, Lean FZX, Atkinson I, Fones A, Paudyal B, Kirk J, Vatzia E, Gubbins S, Bickerton E, Briggs E, Núñez A, McNee A, Moffat K, Freimanis G, Rollier C, Muir A, Richard AC, Angelopoulos N, Gerner W, Tchilian E

Journal of immunology (Baltimore, Md. : 1950), PMID: 4030457930
Apr 2025

Single-cell analysis reveals lasting immunological consequences of influenza infection and respiratory immunization in the pig lung.

Muir A, Paudyal B, Schmidt S, Sedaghat-Rostami E, Chakravarti S, Villanueva-Hernández S, Moffat K, Polo N, Angelopoulos N, Schmidt A, Tenbusch M, Freimanis G, Gerner W, Richard AC, Tchilian E 

PLoS pathogens, PMID: 39024231
Jul 2024

A metabolic pacer ensures smooth running of the lymphocyte activation race.

Panova V, Richard AC

Science immunology, PMID: 3848935115
Mar 2024

ChAdOx1 nCoV-19 vaccination generates spike-specific CD8 T cells in aged mice.

Foster WS, Newman J, Thakur N, Spencer AJ, Davies S, Woods D, Godfrey L, Ross SH, Sharpe HJ, Richard AC, Bailey D, Lambe T, Linterman MA

Immunology and cell biology, PMID: 3697516928
Mar 2023

Super-killer CTLs are generated by single gene deletion of Bach2.

Barton PR, Davenport AJ, Hukelmann J, Cantrell DA, Stinchcombe JC, Richard AC, Griffiths GM

European journal of immunology, PMID: 3608688410
Sep 2022

Teaching and Supervisions

Research supervision: 

We always welcome informal enquiries about opportunities within the lab.

Affiliations

Classifications: 
Departments and institutes: 
Person keywords: 
single cell transcriptomics
computational biology
cytotoxic T cells (CTL)
cell signalling
CD8 T cells
control of gene expression